1ZZ5	Rna	date	Jun 13, 2005
title	Molecular Recognition Of Rna By Neomycin And A Restricted Ne Derivative
authors	Q.Zhao, F.Zhao, K.F.Blount, Q.Han, Y.Tor, T.Hermann
compound		source
Molecule: 5'-R(Gpupgpgpupgpapapgpupcpgpcpgpg Chain: A, C Fragment: Ribosomal Rna A-Site Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Escherichi (Bacteria) Except One Residue Was Removed Near 3' Terminal;
Molecule: 5'-R(Cpgpcpgpupcpapcpapcpcpapcpc)-3 Chain: B, D Fragment: Ribosomal Rna A-Site Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Escherichi (Bacteria) Except One Residue Was Removed Near 3' Terminal
symmetry	Space Group: P 21 21 21	R_factor 0.233 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.740 50.750 144.720 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	CNY, MG	enzyme
Primary reference	Molecular recognition of RNA by neomycin and a restricted neomycin derivative., Zhao F, Zhao Q, Blount KF, Han Q, Tor Y, Hermann T, Angew Chem Int Ed Engl 2005 Aug 19;44(33):5329-34. PMID:16037995

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (1zz5.pdb1.gz) 15 Kb Biological Unit Coordinates (1zz5.pdb2.gz) 15 Kb LPC: Ligand-Protein Contacts for 1ZZ5 CSU: Contacts of Structural Units for 1ZZ5 Likely Quarternary Molecular Structure file(s) for 1ZZ5 Structure Factors (71 Kb) Retrieve 1ZZ5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ZZ5 from S2C, [Save to disk] Re-refined 1zz5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ZZ5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ZZ5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ZZ5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1zz5_B] [1zz5_D] [1zz5_A] [1zz5] [1zz5_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 1ZZ5

Community annotation for 1ZZ5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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