217D Dna-Rna Hybrid date Jul 18, 1995
title Crystal Structures Of The B-Form Dna-Rna Chimer (5'-D(Ip)- D(Ip)-R(Cp)-D(Ipcpipc)-3') Complexed With Distamyci
authors X.Chen, B.Ramakrishnan, M.Sundaralingam
compound source
Molecule: Dnarna (5'-D(Ip)-R(Cp)-D(Ip)-R(Cp)-D(Ip 3');
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 41 2 2
R_factor 0.159 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.930 27.930 57.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand DMY, MG enzyme
Primary referenceCrystal structures of B-form DNA-RNA chimers complexed with distamycin., Chen X, Ramakrishnan B, Sundaralingam M, Nat Struct Biol 1995 Sep;2(9):733-5. PMID:7552741
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (217d.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 217D
  • CSU: Contacts of Structural Units for 217D
  • Likely Quarternary Molecular Structure file(s) for 217D
  • Structure Factors (13 Kb)
  • Retrieve 217D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 217D from S2C, [Save to disk]
  • Re-refined 217d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 217D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 217D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 217D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [217d_A] [217d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 217D
  • Community annotation for 217D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
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