274D Dna date Apr 28, 1994
title Crystal Structure Of A Covalent Dna-Drug Adduct: Anthramycin C-C-A-A-C-G-T-T-G-G, And A Molecular Explanation Of Specifi
authors M.L.Kopka, D.S.Goodsell, I.Baikalov, K.Grzeskowiak, D.Cascio, R.E.Dickerson
compound source
Molecule: Dna (5'-D(Cpcpapapcpgptptp(Drug)Gpg)-3'
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 32 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
23.950 23.950 88.890 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand ANT enzyme
Primary referenceCrystal structure of a covalent DNA-drug adduct: anthramycin bound to C-C-A-A-C-G-T-T-G-G and a molecular explanation of specificity., Kopka ML, Goodsell DS, Baikalov I, Grzeskowiak K, Cascio D, Dickerson RE, Biochemistry 1994 Nov 22;33(46):13593-610. PMID:7947769
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (274d.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 274D
  • CSU: Contacts of Structural Units for 274D
  • Likely Quarternary Molecular Structure file(s) for 274D
  • Retrieve 274D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 274D from S2C, [Save to disk]
    • View 274D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 274D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 274D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [274d_A] [274d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 274D
  • Community annotation for 274D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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