28SR Rna date Apr 15, 1999
title Nmr Structure Of The Most Conserved Rna Motif In Srp Rna
authors U.Schmitz, T.L.James, P.Lukavsky, P.Walter
compound source
Molecule: Srp Domain Iv
Chain: A
Fragment: Srp Domain Iv
Synonym: Srp54 Binding Domain
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Other_details: Prepared By In Vitro Transcription With T7 R Polymerase
methodSolution NMR
Primary referenceStructure of the most conserved internal loop in SRP RNA., Schmitz U, James TL, Lukavsky P, Walter P, Nat Struct Biol 1999 Jul;6(7):634-8. PMID:10404218
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (28sr.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 28SR
  • Retrieve 28SR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 28SR from S2C, [Save to disk]
    • View 28SR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 28SR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 28SR, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [28sr] [28sr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 28SR
  • Community annotation for 28SR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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