298D	Dna	date	Oct 10, 1996
title	Targeting The Minor Groove Of Dna: Crystal Structures Of Two Between Furan Derivatives Of Berenil And The Dna Dodecamer D(Cgcgaattcgcg)2
authors	J.O.Trent, G.R.Clark, A.Kumar, W.D.Wilson, D.W.Boykin, J.E.Hall, R.R.Tidwell, B.L.Blagburn, S.Neidle
compound		source
Molecule: Dna (5'-D(Cpgpcpgpapaptptpcpgpcpg)-3' Chain: A, B
symmetry	Space Group: P 21 21 21	R_factor 0.169 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 24.600 40.070 65.450 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	D18	enzyme
Primary reference	Targeting the minor groove of DNA: crystal structures of two complexes between furan derivatives of berenil and the DNA dodecamer d(CGCGAATTCGCG)2., Trent JO, Clark GR, Kumar A, Wilson WD, Boykin DW, Hall JE, Tidwell RR, Blagburn BL, Neidle S, J Med Chem 1996 Nov 8;39(23):4554-62. PMID:8917643

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk] Biological Unit Coordinates (298d.pdb1.gz) 12 Kb LPC: Ligand-Protein Contacts for 298D CSU: Contacts of Structural Units for 298D Likely Quarternary Molecular Structure file(s) for 298D Structure Factors (16 Kb) Retrieve 298D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 298D from S2C, [Save to disk] Re-refined 298d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 298D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 298D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 298D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [298d_A] [298d_B] [298d] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 298D

Community annotation for 298D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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