2BLJ Oxygen Transport date Mar 04, 2005
title Structure Of L29w Mbco
authors K.Nienhaus, A.Ostermann, G.U.Nienhaus, F.G.Parak, M.Schmidt
compound source
Molecule: Myoglobin
Chain: M
Engineered: Yes
Mutation: Yes
 Organism_scientific: Physeter Catodon
Organism_common: Sperm Whale
Organism_taxid: 9755
Tissue: Muscle
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 6
R_factor 0.224 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.870 91.870 46.040 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand CMO, HEM enzyme
related structures by homologous chain: 109M, 1M6M
Gene
Ontology
ChainFunctionProcessComponent
M


Primary referenceLigand migration and protein fluctuations in myoglobin mutant L29W., Nienhaus K, Ostermann A, Nienhaus GU, Parak FG, Schmidt M, Biochemistry. 2005 Apr 5;44(13):5095-105. PMID:15794647
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (2blj.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 2BLJ
  • CSU: Contacts of Structural Units for 2BLJ
  • Likely Quarternary Molecular Structure file(s) for 2BLJ
  • Retrieve 2BLJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BLJ from S2C, [Save to disk]
    • View 2BLJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BLJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BLJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2blj_M] [2blj]
  • SWISS-PROT database: [P02185]
  • Domain organization of [MYG_PHYCA] by SWISSPFAM
    • Other resources with information on 2BLJ
  • Community annotation for 2BLJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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