2CYP Oxidoreductase (H2o2(A)) date Aug 27, 1985
title Crystal Structure Of Yeast Cytochrome C Peroxidase Refined A Angstroms Resolution
authors B.C.Finzel, T.L.Poulos, J.Kraut
compound source
Molecule: Cytochrome C Peroxidase
Chain: A
Ec: 1.11.1.5
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.400 76.800 51.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand HEM, O enzyme Oxidoreductase E.C.1.11.1.5 BRENDA
note 2CYP supersedes 1CYP
related structures by homologous chain: 1KOK, 1KXM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of yeast cytochrome c peroxidase refined at 1.7-A resolution., Finzel BC, Poulos TL, Kraut J, J Biol Chem 1984 Nov 10;259(21):13027-36. PMID:6092361
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2cyp.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 2CYP
  • CSU: Contacts of Structural Units for 2CYP
  • Likely Quarternary Molecular Structure file(s) for 2CYP
  • Structure Factors (871 Kb)
  • Retrieve 2CYP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CYP from S2C, [Save to disk]
  • Re-refined 2cyp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2CYP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CYP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CYP, from MSDmotif at EBI
  • Genome occurence of 2CYP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2cyp__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cyp_A] [2cyp]
  • SWISS-PROT database: [P00431]
  • Domain organization of [CCPR_YEAST] by SWISSPFAM
    • Other resources with information on 2CYP
  • Community annotation for 2CYP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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