2MIP Hydrolase Hydrolase Inhibitor date Jun 03, 1993
title Crystal Structure Of Human Immunodeficiency Virus (Hiv) Type Protease In Complex With A Reduced Amide Inhibitor And Comp With Hiv-1 Protease Structures
authors L.Tong, S.Pav, C.Pargellis, F.Do, D.Lamarre, P.C.Anderson
compound source
Molecule: Hiv-2 Protease
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus 2
Organism_taxid: 11709
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Inhibitor Bi-La-398
Chain: E, F, G, H
Engineered: Yes
symmetry Space Group: P 43
R_factor 0.176 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.100 55.100 138.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand NH2 enzyme
related structures by homologous chain: 1AZ5, 1IDB
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of human immunodeficiency virus (HIV) type 2 protease in complex with a reduced amide inhibitor and comparison with HIV-1 protease structures., Tong L, Pav S, Pargellis C, Do F, Lamarre D, Anderson PC, Proc Natl Acad Sci U S A 1993 Sep 15;90(18):8387-91. PMID:8378311
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2mip.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (2mip.pdb2.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 2MIP
  • CSU: Contacts of Structural Units for 2MIP
  • Likely Quarternary Molecular Structure file(s) for 2MIP
  • Retrieve 2MIP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MIP from S2C, [Save to disk]
    • View 2MIP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2MIP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MIP, from MSDmotif at EBI
  • Genome occurence of 2MIP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2mipa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2mipb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d2mipc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d2mipd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mip_B] [2mip_F] [2mip_A] [2mip_D] [2mip_C] [2mip_G] [2mip_H] [2mip] [2mip_E]
  • SWISS-PROT database: [P04584]
  • Domain organization of [POL_HV2RO] by SWISSPFAM
    • Other resources with information on 2MIP
  • Community annotation for 2MIP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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