2ADU Hydrolase date Jul 20, 2005
title Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-Tr Inhibitor
authors L.S.Kallander, Q.Lu, W.Chen, T.Tomaszek, G.Yang, D.Tew, T.D.Meek, G.A.Hofmann, C.K.Schulz-Pritchard, W.W.Smith, C.A.Janson, M.D.R G.F.Zhang, K.O.Johanson, R.B.Kirkpatrick, T.F.Ho, P.W.Fisher, M.R.Mattern, R.K.Johnson, M.J.Hansbury, J.D.Winkler, K.W.Ward, D S.K.Thompson
compound source
Molecule: Methionine Aminopeptidase 2
Chain: A
Fragment: Residues 110-478
Synonym: Metap 2, Peptidase M 2, Initiation Factor 2 Associ Kda Glycoprotein, P67, P67eif2;
Ec: 3.4.11.18
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Metap2, Mnpep, P67eif2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac-1
symmetry Space Group: C 2 2 21
R_factor 0.335 R_Free 0.355
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.819 99.264 101.282 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CO, R20 BindingDB enzyme Hydrolase E.C.3.4.11.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference4-Aryl-1,2,3-triazole: a novel template for a reversible methionine aminopeptidase 2 inhibitor, optimized to inhibit angiogenesis in vivo., Kallander LS, Lu Q, Chen W, Tomaszek T, Yang G, Tew D, Meek TD, Hofmann GA, Schulz-Pritchard CK, Smith WW, Janson CA, Ryan MD, Zhang GF, Johanson KO, Kirkpatrick RB, Ho TF, Fisher PW, Mattern MR, Johnson RK, Hansbury MJ, Winkler JD, Ward KW, Veber DF, Thompson SK, J Med Chem 2005 Sep 8;48(18):5644-7. PMID:16134930
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (2adu.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 2ADU
  • CSU: Contacts of Structural Units for 2ADU
  • Likely Quarternary Molecular Structure file(s) for 2ADU
  • Retrieve 2ADU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ADU from S2C, [Save to disk]
  • View 2ADU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ADU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ADU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2adu] [2adu_A]
  • SWISS-PROT database: [P50579]
  • Domain organization of [AMPM2_HUMAN] by SWISSPFAM
  • Other resources with information on 2ADU
  • Community annotation for 2ADU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science