2ALE Rna Binding Protein date Aug 05, 2005
title Crystal Structure Of Yeast Rna Splicing Factor Snu13p
authors H.C.Dobbyn, P.A.Mcewan, J.Bella, R.T.O'Keefe
compound source
Molecule: Nhp2l7ae Family Protein Yel026w
Chain: A
Synonym: Snu13
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
symmetry Space Group: P 31 2 1
R_factor 0.223 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.330 70.330 53.303 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAnalysis of pre-mRNA and pre-rRNA processing factor Snu13p structure and mutants., Dobbyn HC, McEwan PA, Krause A, Novak-Frazer L, Bella J, O'Keefe RT, Biochem Biophys Res Commun. 2007 Sep 7;360(4):857-62. Epub 2007 Jul 9. PMID:17631273
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2ale.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 2ALE
  • CSU: Contacts of Structural Units for 2ALE
  • Likely Quarternary Molecular Structure file(s) for 2ALE
  • Structure Factors (116 Kb)
  • Retrieve 2ALE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ALE from S2C, [Save to disk]
  • Re-refined 2ale structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2ALE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ALE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ALE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ale_A] [2ale]
  • SWISS-PROT database: [P39990]
  • Domain organization of [SNU13_YEAST] by SWISSPFAM
    • Other resources with information on 2ALE
  • Community annotation for 2ALE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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