2AO5 Rna date Aug 12, 2005
title Crystal Structure Of An Rna Duplex R(Ggcgbrugcgcu)2 With Ter Internal Tandem G-U Base Pairs
authors R.Utsunomiya, K.Suto, D.Balasundaresan, A.Fukamizu, P.K.Kumar, H.
compound source
Molecule: 5'-R(Gpgpcpgp(5bu)Pgpcpgpcpu)-3'
Chain: A, B, C, D
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 43
R_factor 0.207 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.693 37.693 96.283 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 5BU, MG enzyme
Primary referenceStructure of an RNA duplex r(GGCGBrUGCGCU)2 with terminal and internal tandem G.U base pairs., Utsunomiya R, Suto K, Balasundaresan D, Fukamizu A, Kumar PK, Mizuno H, Acta Crystallogr D Biol Crystallogr. 2006 Mar;62(Pt 3):331-8. Epub 2006, Feb 22. PMID:16510980
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2ao5.pdb1.gz) 12 Kb
  • Biological Unit Coordinates (2ao5.pdb2.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 2AO5
  • CSU: Contacts of Structural Units for 2AO5
  • Likely Quarternary Molecular Structure file(s) for 2AO5
  • Structure Factors (114 Kb)
  • Retrieve 2AO5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AO5 from S2C, [Save to disk]
  • Re-refined 2ao5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2AO5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2AO5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AO5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ao5] [2ao5_D] [2ao5_B] [2ao5_C] [2ao5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2AO5
  • Community annotation for 2AO5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science