2B38 Plant Protein date Sep 19, 2005
title Solution Structure Of Kalata B8
authors N.L.Daly, R.J.Clark, M.R.Plan, D.J.Craik
compound source
Molecule: Kalata B8
Chain: A
 Organism_scientific: Oldenlandia Affinis
Organism_taxid: 60225
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceKalata B8, a novel antiviral circular protein, exhibits conformational flexibility in the cystine knot motif., Daly NL, Clark RJ, Plan MR, Craik DJ, Biochem J. 2006 Feb 1;393(Pt 3):619-26. PMID:16207177
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (2b38.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 2B38
  • Original NMR restraints for 2B38 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2B38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B38 from S2C, [Save to disk]
    • View 2B38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2B38
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B38, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b38_A] [2b38]
  • SWISS-PROT database: [P85175]
  • Domain organization of [KAB8_OLDAF] by SWISSPFAM
    • Other resources with information on 2B38
  • Community annotation for 2B38 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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