2B3T Translation date Sep 21, 2005
title Structure Of Complex Between E. Coli Translation Termination Rf1 And The Prmc Methyltransferase
authors M.Graille, V.Heurgue-Hamard, S.Champ, L.Mora, N.Scrima, N.Ulryck, Tilbeurgh, R.H.Buckingham
compound source
Molecule: Protein Methyltransferase Hemk
Chain: A
Synonym: Protein-Glutamine N- Methyltransferase Hemk; Prote (Glutamine-N5) Mtase Hemk; M.Ecokhemkp;
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Hemk
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Peptide Chain Release Factor 1
Chain: B
Synonym: Rf-1
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Prfa, Sueb, Uar
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.244 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.540 77.470 89.490 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand SAH enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceMolecular basis for bacterial class I release factor methylation by PrmC., Graille M, Heurgue-Hamard V, Champ S, Mora L, Scrima N, Ulryck N, van Tilbeurgh H, Buckingham RH, Mol Cell. 2005 Dec 22;20(6):917-27. PMID:16364916
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (2b3t.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 2B3T
  • CSU: Contacts of Structural Units for 2B3T
  • Likely Quarternary Molecular Structure file(s) for 2B3T
  • Structure Factors (123 Kb)
  • Retrieve 2B3T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B3T from S2C, [Save to disk]
  • Re-refined 2b3t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B3T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B3T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B3T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b3t] [2b3t_A] [2b3t_B]
  • SWISS-PROT database: [P0ACC1] [P0A7I0]
  • Domain organization of [HEMK_ECOLI] [RF1_ECOLI] by SWISSPFAM
  • Domain found in 2B3T: [PCRF ] by SMART
  • Other resources with information on 2B3T
  • Community annotation for 2B3T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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