2B9B Viral Protein date Oct 11, 2005
title Structure Of The Parainfluenza Virus 5 F Protein In Its Meta Pre-Fusion Conformation
authors H.S.Yin, X.Wen, R.G.Paterson, R.A.Lamb, T.S.Jardetzky
compound source
Molecule: Fusion Glycoprotein F0
Chain: A, B, C
Fragment: Residues 20-477
Engineered: Yes
 Organism_scientific: Simian Virus 5
Organism_taxid: 11207
Gene: F
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pmelbac
symmetry Space Group: C 2 2 21
R_factor 0.222 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.206 259.864 154.012 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure of the parainfluenza virus 5 F protein in its metastable, prefusion conformation., Yin HS, Wen X, Paterson RG, Lamb RA, Jardetzky TS, Nature. 2006 Jan 5;439(7072):38-44. PMID:16397490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (2b9b.pdb1.gz) 221 Kb
  • LPC: Ligand-Protein Contacts for 2B9B
  • CSU: Contacts of Structural Units for 2B9B
  • Likely Quarternary Molecular Structure file(s) for 2B9B
  • Structure Factors (634 Kb)
  • Retrieve 2B9B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B9B from S2C, [Save to disk]
  • Re-refined 2b9b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2B9B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2B9B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B9B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b9b_C] [2b9b_A] [2b9b] [2b9b_B]
  • SWISS-PROT database: [P04849]
  • Domain organization of [FUS_SV5] by SWISSPFAM
    • Other resources with information on 2B9B
  • Community annotation for 2B9B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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