2BAW	Transcription	date	Oct 15, 2005
title	Human Nuclear Receptor-Ligand Complex 1
authors	S.A.Fyffe, M.S.Alphey, L.Buetow, T.K.Smith, M.A.J.Ferguson, M.D.S F.Bjorkling, W.N.Hunter
compound		source
Molecule: Peroxisome Proliferator Activated Receptor Delta Chain: A, B Synonym: Ppar-Delta, Ppar-Beta, Nuclear Hormone Receptor 1, Nuci; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pseta With T7 Promoter
symmetry	Space Group: P 1 21 1	R_factor 0.245 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.770 94.220 96.700 90.00 97.77 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	B7G, VCA	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Reevaluation of the PPAR-beta/delta ligand binding domain model reveals why it exhibits the activated form., Fyffe SA, Alphey MS, Buetow L, Smith TK, Ferguson MA, Sorensen MD, Bjorkling F, Hunter WN, Mol Cell. 2006 Jan 6;21(1):1-2. PMID:16387648

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (2baw.pdb1.gz) 44 Kb Biological Unit Coordinates (2baw.pdb2.gz) 42 Kb LPC: Ligand-Protein Contacts for 2BAW CSU: Contacts of Structural Units for 2BAW Likely Quarternary Molecular Structure file(s) for 2BAW Structure Factors (307 Kb) Retrieve 2BAW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BAW from S2C, [Save to disk] Re-refined 2baw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BAW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BAW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BAW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2baw_A] [2baw_B] [2baw] SWISS-PROT database: [Q03181] Domain organization of [PPARD_HUMAN] by SWISSPFAM Domain found in 2BAW: [HOLI ] by SMART

Other resources with information on 2BAW

Community annotation for 2BAW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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