2BBK Electron Transport date Dec 17, 1993
title Crystal Structure Of The Quinoprotein Methylamine Dehydrogenase From Paracoccus Denitrificans At 1.75 Angstroms
authors L.Chen, F.S.Mathews
compound source
Molecule: Methylamine Dehydrogenase (Heavy Subunit)
Chain: H, J
Ec: 1.4.99.3
Engineered: Yes
Organism_scientific: Paracoccus Denitrificans
Organism_taxid: 266

Molecule: Methylamine Dehydrogenase (Light Subunit)
Chain: L, M
Ec: 1.4.99.3
Engineered: Yes

Organism_scientific: Paracoccus Denitrificans
Organism_taxid: 266
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.070 135.920 55.260 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand TRQ enzyme Oxidoreductase E.C.1.4.99.3 BRENDA
related structures by homologous chain: 1MG2
Gene
Ontology
ChainFunctionProcessComponent
H, J


M, L


Primary referenceRefined crystal structure of methylamine dehydrogenase from Paracoccus denitrificans at 1.75 A resolution., Chen L, Doi M, Durley RC, Chistoserdov AY, Lidstrom ME, Davidson VL, Mathews FS, J Mol Biol 1998 Feb 13;276(1):131-49. PMID:9514722
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (2bbk.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 2BBK
  • CSU: Contacts of Structural Units for 2BBK
  • Likely Quarternary Molecular Structure file(s) for 2BBK
  • Retrieve 2BBK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BBK from S2C, [Save to disk]
  • View 2BBK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BBK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BBK, from MSDmotif at EBI
  • Genome occurence of 2BBK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2bbkh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d2bbkj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d2bbkl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d2bbkm_, region M [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bbk] [2bbk_H] [2bbk_J] [2bbk_L] [2bbk_M]
  • SWISS-PROT database: [P29894] [P22619]
  • Domain organization of [DHMH_PARDE] [DHML_PARDE] by SWISSPFAM
  • Other resources with information on 2BBK
  • Community annotation for 2BBK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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