2BFR Macro_h2a Domain Hydrolase date Dec 10, 2004
title The Macro Domain Is An Adp-Ribose Binding Module
authors G.I.Karras, H.R.Buhecha, M.D.Allen, C.Pugieux, F.Sait, M.Bycroft, A.G.Ladurner
compound source
Molecule: Hypothetical Protein Af1521
Chain: A
Engineered: Yes
 Organism_scientific: Archaeoglobus Fulgidus
Organism_taxid: 2234
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: C41
Expression_system_plasmid: Pbe
symmetry Space Group: P 61
R_factor 0.202 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.840 87.840 61.069 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand ADP, FME, MG enzyme
related structures by homologous chain: 1HJZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe macro domain is an ADP-ribose binding module., Karras GI, Kustatscher G, Buhecha HR, Allen MD, Pugieux C, Sait F, Bycroft M, Ladurner AG, EMBO J. 2005 Jun 1;24(11):1911-20. Epub 2005 May 19. PMID:15902274
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (2bfr.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 2BFR
  • CSU: Contacts of Structural Units for 2BFR
  • Likely Quarternary Molecular Structure file(s) for 2BFR
  • Structure Factors (66 Kb)
  • Retrieve 2BFR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BFR from S2C, [Save to disk]
  • Re-refined 2bfr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2BFR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BFR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BFR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2bfra_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bfr_A] [2bfr]
  • SWISS-PROT database: [O28751]
  • Domain organization of [Y1521_ARCFU] by SWISSPFAM
  • Domain found in 2BFR: [A1pp ] by SMART
    • Other resources with information on 2BFR
  • Community annotation for 2BFR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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