2BJ4 Nuclear Receptor date Jan 28, 2005
title Estrogen Receptor Alpha Lbd In Complex With A Phage-Display Peptide Antagonist
authors E.Kong, N.Heldring, J.A.Gustafsson, E.Treuter, R.E.Hubbard, A.C.W
compound source
Molecule: Estrogen Receptor
Chain: A
Fragment: Residues 305-533 (Ligand-Binding Domain)
Synonym: Er, Estradiol Receptor, Er-Alpha
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_plasmid: Pet15b

Molecule: Estrogen Receptor
Chain: B
Fragment: Residues 305-533 (Ligand-Binding Domain)
Synonym: Er, Estradiol Receptor, Er-Alpha
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_plasmid: Pet15b

Molecule: Peptide Antagonist
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.760 98.760 105.640 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CCS, OHT BindingDB enzyme
related structures by homologous chain: 1L2I, 1X7R
Primary referenceDelineation of a unique protein-protein interaction site on the surface of the estrogen receptor., Kong EH, Heldring N, Gustafsson JA, Treuter E, Hubbard RE, Pike AC, Proc Natl Acad Sci U S A. 2005 Mar 8;102(10):3593-8. Epub 2005 Feb 23. PMID:15728727
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (2bj4.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 2BJ4
  • CSU: Contacts of Structural Units for 2BJ4
  • Likely Quarternary Molecular Structure file(s) for 2BJ4
  • Structure Factors (462 Kb)
  • Retrieve 2BJ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BJ4 from S2C, [Save to disk]
  • Re-refined 2bj4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BJ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BJ4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BJ4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bj4_D] [2bj4_A] [2bj4_B] [2bj4] [2bj4_C]
  • SWISS-PROT database: [P03372]
  • Domain organization of [ESR1_HUMAN] by SWISSPFAM
  • Domain found in 2BJ4: [HOLI ] by SMART
  • Other resources with information on 2BJ4
  • Community annotation for 2BJ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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