2BJK	Oxidoreductase	date	Feb 04, 2005
title	Crystal Analysis Of 1-Pyrroline-5-Carboxylate Dehydrogenase Thermus With Bound Nad And Citrate.
authors	E.Inagaki, T.H.Tahirov
compound		source
Molecule: 1-Pyrroline-5-Carboxylate Dehydrogenase Chain: A, B Ec: 1.5.1.12 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: H 3	R_factor 0.156 R_Free 0.170
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.436 102.436 278.559 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.40 Å
ligand	CL, FLC, MPD, MRD, NAD	enzyme	Oxidoreductase E.C.1.5.1.12 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of Thermus thermophilus Delta1-pyrroline-5-carboxylate dehydrogenase., Inagaki E, Ohshima N, Takahashi H, Kuroishi C, Yokoyama S, Tahirov TH, J Mol Biol. 2006 Sep 22;362(3):490-501. Epub 2006 Jul 29. PMID:16934832

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk] Biological Unit Coordinates (2bjk.pdb1.gz) 568 Kb LPC: Ligand-Protein Contacts for 2BJK CSU: Contacts of Structural Units for 2BJK Likely Quarternary Molecular Structure file(s) for 2BJK Structure Factors (4862 Kb) Retrieve 2BJK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BJK from S2C, [Save to disk] Re-refined 2bjk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BJK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BJK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BJK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bjk_A] [2bjk_B] [2bjk] SWISS-PROT database: [Q5SI02] Domain organization of [Q5SI02_THET8] by SWISSPFAM

Other resources with information on 2BJK

Community annotation for 2BJK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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