2BL5 Rna Binding date Mar 01, 2005
title Solution Structure Of The Kh-Qua2 Region Of The Xenopus Star-Gsg Quaking Protein.
authors M.L.Maguire, G.Guler-Gane, D.Nietlispach, A.R.C.Raine, A.M.Zorn, N.Standart, R.W.Broadhurst
compound source
Molecule: Mgc83862 Protein
Chain: A
Fragment: Kh-Qua2 Region, Residues 82-215
Synonym: Quaking Protein
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Other_details: Gene Expression Was Induced By The Addition Of Iptg To A Final Concentration Of 0.5 Mm And The Cells Were Incubated For 3 H At 37 Degrees C. The Cells Were Harvested By Centrifugation At 6000 Rpm For 20 Min And Stored At -20 Degrees C Until Required. The Cells Were Resuspended In Te Buffer (Containing 1 Mm Edta, 25 Mm Tris) At Ph 8.0 And Then Broken In A French Press. The Cell Debris Was Removed By Centrifugation At 40000 G For 30 Min, Following Which The Pellet Was Resuspended In 50 Ml Of 20 Mm Sodium Phosphate Containing 10 Per Cent Triton X-100 And 100 Mm Sodium Chloride. The Crude Extract Was Added To 6 Ml Of Ni-Nta Resin (Qiagen), Mixed For 2 H At 4 Degrees C, Spun Down At 5000 G For 10 Min And The Supernatant Discarded. The Beads Were Loaded On To A Column, Washed With 2 Volumes Of Resuspension Buffer And Then 2 Volumes Of Elution Buffer (Containing 500 Mm Imidazole, 50 Mm Sodium Chloride And 20 Mm Sodium Phosphate). The Eluate Was Desalted On A Sephadex G-25 Pd-10 Column (Pharmacia) And Then Concentrated To 1 Mm Using A Biomax 10k Membrane To A Final Volume Of 500 Microlitres. The Protein Product Corresponds To Residues 81 To 214 Of Full Length Pxqua, With A C-Terminal His6 Extension
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and backbone dynamics of the KH-QUA2 region of the Xenopus STAR/GSG quaking protein., Maguire ML, Guler-Gane G, Nietlispach D, Raine AR, Zorn AM, Standart N, Broadhurst RW, J Mol Biol. 2005 Apr 29;348(2):265-79. PMID:15811367
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (684 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2BL5
  • Original NMR restraints for 2BL5 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2BL5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BL5 from S2C, [Save to disk]
  • View 2BL5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BL5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BL5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bl5] [2bl5_A]
  • SWISS-PROT database: [Q32NN2] [Q6IRN2]
  • Domain organization of [QKIA_XENLA] [QKIB_XENLA] by SWISSPFAM
  • Domain found in 2BL5: [KH ] by SMART
  • Other resources with information on 2BL5
  • Community annotation for 2BL5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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