2BNJ Hydrolase date Mar 25, 2005
title The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabin Decorations Of Xylan As Significant Substrate Specificity Determinants.
authors M.Vardakou, J.W.Murray, J.Flint, P.Christakopoulos, R.J.Lewis, H.
compound source
Molecule: Endo-1,4-Beta-Xylanase
Chain: A
Synonym: Family 10 Xylanase, 1,4-Beta-D-Xylan Xylanohydrola
Ec: 3.2.1.8
 Organism_scientific: Thermoascus Aurantiacus
Organism_taxid: 5087
Variant: Mieche, Imi 216529
symmetry Space Group: C 1 2 1
R_factor 0.115 R_Free 0.147
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.224 49.462 77.384 90.00 125.38 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand AHR, FER, PCA, XYP enzyme Hydrolase E.C.3.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA family 10 Thermoascus aurantiacus xylanase utilizes arabinose decorations of xylan as significant substrate specificity determinants., Vardakou M, Flint J, Christakopoulos P, Lewis RJ, Gilbert HJ, Murray JW, J Mol Biol. 2005 Oct 7;352(5):1060-7. PMID:16140328
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2bnj.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 2BNJ
  • CSU: Contacts of Structural Units for 2BNJ
  • Likely Quarternary Molecular Structure file(s) for 2BNJ
  • Structure Factors (387 Kb)
  • Retrieve 2BNJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BNJ from S2C, [Save to disk]
  • Re-refined 2bnj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2BNJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BNJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BNJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bnj_A] [2bnj]
  • SWISS-PROT database: [P23360]
  • Domain organization of [XYNA_THEAU] by SWISSPFAM
  • Domain found in 2BNJ: [Glyco_10 ] by SMART
    • Other resources with information on 2BNJ
  • Community annotation for 2BNJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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