2BRT Oxidoreductase date May 11, 2005
title Anthocyanidin Synthase From Arabidopsis Thaliana Complexed W Naringenin
authors J.J.Turnbull, I.J.Clifton, R.W.D.Welford, C.J.Schofield
compound source
Molecule: Leucoanthocyanidin Dioxygenase
Chain: A
Synonym: Ldox, Leucocyanidin Oxygenase, Ans, Leucoanthocyan Hydroxylase, Anthocyanidin Synthase;
Ec: 1.14.11.19
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet-24a
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.807 62.309 102.493 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand AKG, FE2, NAR enzyme Oxidoreductase E.C.1.14.11.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and mechanistic studies on anthocyanidin synthase catalysed oxidation of flavanone substrates: the effect of C-2 stereochemistry on product selectivity and mechanism., Welford RW, Clifton IJ, Turnbull JJ, Wilson SC, Schofield CJ, Org Biomol Chem. 2005 Sep 7;3(17):3117-26. Epub 2005 Aug 1. PMID:16106293
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (2brt.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 2BRT
  • CSU: Contacts of Structural Units for 2BRT
  • Likely Quarternary Molecular Structure file(s) for 2BRT
  • Structure Factors (134 Kb)
  • Retrieve 2BRT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BRT from S2C, [Save to disk]
  • Re-refined 2brt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BRT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BRT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BRT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2brt] [2brt_A]
  • SWISS-PROT database: [Q96323]
  • Domain organization of [LDOX_ARATH] by SWISSPFAM
  • Other resources with information on 2BRT
  • Community annotation for 2BRT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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