2BWB Signaling Protein date Jul 13, 2005
title Crystal Structure Of The Uba Domain Of Dsk2 From S. Cerevisiae
authors E.D.Lowe, N.Hasan, J.F.Trempe, L.Fonso, M.E.M.Noble, J.A.Endicott, L.N.Johnson, N.R.Brown
compound source
Molecule: Ubiquitin-Like Protein Dsk2
Chain: A, B, C, D, E, F, G, H, I
Fragment: Uba Domain, Residues 326-371
Engineered: Yes
Other_details: Ubiquitin Binding Domain Of Dsk2 Protein
 Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)Plyss
Expression_system_plasmid: Pgex-Kg
symmetry Space Group: C 1 2 1
R_factor 0.243 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.311 44.069 111.525 90.00 114.87 90.00
method X-Ray Diffractionresolution 2.3 Å
Primary referenceStructures of the Dsk2 UBL and UBA domains and their complex., Lowe ED, Hasan N, Trempe JF, Fonso L, Noble ME, Endicott JA, Johnson LN, Brown NR, Acta Crystallogr D Biol Crystallogr. 2006 Feb;62(Pt 2):177-88. Epub 2006, Jan 18. PMID:16421449
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (2bwb.pdb1.gz) 9 Kb
  • Biological Unit Coordinates (2bwb.pdb2.gz) 9 Kb
  • Biological Unit Coordinates (2bwb.pdb3.gz) 9 Kb
  • Biological Unit Coordinates (2bwb.pdb4.gz) 9 Kb
  • Biological Unit Coordinates (2bwb.pdb5.gz) 9 Kb
  • Biological Unit Coordinates (2bwb.pdb6.gz) 9 Kb
  • Biological Unit Coordinates (2bwb.pdb7.gz) 9 Kb
  • Biological Unit Coordinates (2bwb.pdb8.gz) 9 Kb
  • Biological Unit Coordinates (2bwb.pdb9.gz) 8 Kb
  • CSU: Contacts of Structural Units for 2BWB
  • Likely Quarternary Molecular Structure file(s) for 2BWB
  • Structure Factors (158 Kb)
  • Retrieve 2BWB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BWB from S2C, [Save to disk]
  • Re-refined 2bwb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2BWB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BWB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BWB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bwb_F] [2bwb_I] [2bwb_A] [2bwb_C] [2bwb] [2bwb_E] [2bwb_G] [2bwb_B] [2bwb_H] [2bwb_D]
  • SWISS-PROT database: [P48510]
  • Domain organization of [DSK2_YEAST] by SWISSPFAM
  • Domain found in 2BWB: [UBA ] by SMART
    • Other resources with information on 2BWB
  • Community annotation for 2BWB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science