2C06 Toxin date Aug 25, 2005
title Nmr-Based Model Of The Complex Of The Toxin Kid And A 5-Nucl Substrate Rna Fragment (Auaca)
authors M.B.Kamphuis, A.M.J.J.Bonvin, M.C.Monti, M.Lemonnier, A.Munoz-Go R.H.H.Van Den Heuvel, R.Diaz-Orejas, R.Boelens
compound source
Molecule: Kid Toxin Protein
Chain: A, B
Synonym: Protein Pemk
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: R1

Molecule: 5'-R(Apupapcpap)-3'
Chain: C
Engineered: Yes
Synthetic: Yes
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceModel for RNA binding and the catalytic site of the RNase Kid of the bacterial parD toxin-antitoxin system., Kamphuis MB, Bonvin AM, Monti MC, Lemonnier M, Munoz-Gomez A, van den Heuvel RH, Diaz-Orejas R, Boelens R, J Mol Biol. 2006 Mar 17;357(1):115-26. Epub 2005 Dec 27. PMID:16413033
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (410 Kb) [Save to disk]
  • Biological Unit Coordinates (2c06.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 2C06
  • Original NMR restraints for 2C06 from PDB
  • Retrieve 2C06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C06 from S2C, [Save to disk]
    • View 2C06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2C06
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C06, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c06] [2c06_C] [2c06_B] [2c06_A]
  • SWISS-PROT database: [P13976]
  • Domain organization of [PEMK_ECOLX] by SWISSPFAM
    • Other resources with information on 2C06
  • Community annotation for 2C06 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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