2C1H Lyase date Sep 14, 2005
title The X-Ray Structure Of Chlorobium Vibrioforme 5-Aminolaevuli Dehydratase Complexed With A Diacid Inhibitor
authors L.Coates, G.Beaven, P.T.Erskine, S.Beale, S.P.Wood, P.M.Shoolingi J.B.Cooper
compound source
Molecule: Delta-Aminolevulinic Acid Dehydratase
Chain: A, B
Synonym: 5-Aminolaevulinic Acid Dehydratase, Porphobilinoge Synthase, Alad, Aladh;
Ec: 4.2.1.24
Engineered: Yes
Other_details: Schiff Base Link Between Lys 200 And Dsb, Sc Link Between Lys 253 And Dsb
Organism_scientific: Chlorobium Vibrioforme
Organism_taxid: 1098
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 4 21 2
R_factor 0.260 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.480 126.480 81.850 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand DSB, MG enzyme Lyase E.C.4.2.1.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of Chlorobium vibrioforme 5-aminolaevulinic acid dehydratase complexed with a diacid inhibitor., Coates L, Beaven G, Erskine PT, Beale SI, Wood SP, Shoolingin-Jordan PM, Cooper JB, Acta Crystallogr D Biol Crystallogr. 2005 Dec;61(Pt 12):1594-8. Epub 2005, Nov 19. PMID:16304458
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (2c1h.pdb1.gz) 402 Kb
  • LPC: Ligand-Protein Contacts for 2C1H
  • CSU: Contacts of Structural Units for 2C1H
  • Likely Quarternary Molecular Structure file(s) for 2C1H
  • Retrieve 2C1H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C1H from S2C, [Save to disk]
  • View 2C1H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C1H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C1H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c1h_A] [2c1h_B] [2c1h]
  • SWISS-PROT database: [Q59334]
  • Domain organization of [HEM2_CHLP8] by SWISSPFAM
  • Domain found in 2C1H: [ALAD ] by SMART
  • Other resources with information on 2C1H
  • Community annotation for 2C1H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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