2C4B Fusion Protein date Oct 18, 2005
title Inhibitor Cystine Knot Protein Mcoeeti Fused To The Catalyti Inactive Barnase Mutant H102a
authors H.H.Niemann, H.U.Schmoldt, A.Wentzel, H.Kolmar, D.W.Heinz
compound source
Molecule: Barnase Mcoeeti Fusion
Chain: A, B
Ec: 3.1.27.3
Engineered: Yes
Mutation: Yes
Other_details: Mcoeeti Is A Hybrid Of Mcoti-II And Eeti-II. Fused C-Terminally To The H102a Mutant Of Barnase With A 4- Linker
Organism_scientific: Bacillus Amyloliquefaciens, Momordica Cochinchinensis, Ecballium Elaterium;
Organism_taxid: 1390, 3674, 3679
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: 71-18
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbar100
Other_details: Mcoeeti Is A Designed Hybrid Carrying Sequen Derived From Momordica Cochinchinensis Mcoti-II And Ecballi Elaterium Eeti-II
symmetry Space Group: C 2 2 21
R_factor 0.132 R_Free 0.164
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.020 217.710 58.340 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand 2PE, EDO, FMT, GOL, MES, SO4, UNX enzyme Hydrolase E.C.3.1.27.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBarnase fusion as a tool to determine the crystal structure of the small disulfide-rich protein McoEeTI., Niemann HH, Schmoldt HU, Wentzel A, Kolmar H, Heinz DW, J Mol Biol. 2006 Feb 10;356(1):1-8. Epub 2005 Nov 21. PMID:16337652
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (2c4b.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (2c4b.pdb2.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 2C4B
  • CSU: Contacts of Structural Units for 2C4B
  • Likely Quarternary Molecular Structure file(s) for 2C4B
  • Structure Factors (874 Kb)
  • Retrieve 2C4B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C4B from S2C, [Save to disk]
  • Re-refined 2c4b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C4B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C4B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C4B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c4b] [2c4b_A] [2c4b_B]
  • SWISS-PROT database: [P12071] [P82409] [P00648]
  • Domain organization of [ITR2_ECBEL] [ITR2_MOMCO] [RNBR_BACAM] by SWISSPFAM
  • Domain found in 2C4B: [PTI ] by SMART
  • Other resources with information on 2C4B
  • Community annotation for 2C4B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science