2C77 Hydrolase Antibiotic date Nov 18, 2005
title Ef-Tu Complexed With A Gtp Analog And The Antibiotic Ge2270
authors A.Parmeggiani, I.M.Krab, S.Okamura, R.C.Nielsen, J.Nyborg, P.Niss
compound source
Molecule: Elongation Factor Tu-B
Chain: A
Synonym: Elongation Factor Tu, Ef-Tu-B
Ec: 3.1.5.1
Engineered: Yes
Other_details: Tufa Gene
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Thiocillin Ge2270
Chain: B
Synonym: Ge22700a

Organism_scientific: Planobispora Rosea
Organism_taxid: 35762
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.320 94.580 104.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand BB6, BB7, BB8, BB9, GNP, MEN, MG, MH6, NH2, PEG enzyme Hydrolase E.C.3.1.5.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis of the action of pulvomycin and GE2270 A on elongation factor Tu., Parmeggiani A, Krab IM, Okamura S, Nielsen RC, Nyborg J, Nissen P, Biochemistry. 2006 Jun 6;45(22):6846-57. PMID:16734421
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (2c77.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 2C77
  • CSU: Contacts of Structural Units for 2C77
  • Likely Quarternary Molecular Structure file(s) for 2C77
  • Structure Factors (783 Kb)
  • Retrieve 2C77 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C77 from S2C, [Save to disk]
  • Re-refined 2c77 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C77 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C77
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C77, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c77_B] [2c77_A] [2c77]
  • SWISS-PROT database: [P60339]
  • Domain organization of [EFTU2_THET8] by SWISSPFAM
  • Other resources with information on 2C77
  • Community annotation for 2C77 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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