2C7B Hydrolase date Nov 21, 2005
title The Crystal Structure Of Este1, A New Thermophilic And Thermostable Carboxylesterase Cloned From A Metagenomic Library
authors J.S.Byun, J.K.Rhee, D.U.Kim, J.W.Oh, H.S.Cho
compound source
Molecule: Carboxylesterase
Chain: A, B
Fragment: Alpha-Beta Hydrolase Fold, Residues 1-311
Synonym: Este1
Ec: 3.1.1.1
Engineered: Yes
Organism_scientific: Uncultured Archaeon
Organism_taxid: 115547
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet28
Other_details: Metagenomes From Thermal Environmental Samples
symmetry Space Group: P 41 21 2
R_factor 0.2338 R_Free 0.2613
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.710 73.710 234.230 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.3 Å
ligand MSE enzyme Hydrolase E.C.3.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of hyperthermophilic esterase EstE1 and the relationship between its dimerization and thermostability properties., Byun JS, Rhee JK, Kim ND, Yoon J, Kim DU, Koh E, Oh JW, Cho HS, BMC Struct Biol. 2007 Jul 12;7:47. PMID:17625021
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (2c7b.pdb1.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 2C7B
  • CSU: Contacts of Structural Units for 2C7B
  • Likely Quarternary Molecular Structure file(s) for 2C7B
  • Structure Factors (300 Kb)
  • Retrieve 2C7B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C7B from S2C, [Save to disk]
  • Re-refined 2c7b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C7B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C7B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C7B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c7b] [2c7b_A] [2c7b_B]
  • SWISS-PROT database: [Q5G935]
  • Domain organization of [Q5G935_9ARCH] by SWISSPFAM
  • Other resources with information on 2C7B
  • Community annotation for 2C7B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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