2C8L Hydrolase date Dec 06, 2005
title Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
authors A.M.Jensen, T.L.Sorensen, C.Olesen, J.V.Moller, P.Nissen
compound source
Molecule: Sarcoplasmicendoplasmic Reticulum Calcium Atpase
Chain: A
Synonym: Calcium Pump 1, Endoplasmic Reticulum Class 12 Ca Atpas, Calcium-Transporting Atpase Sarcoplasmic Reticulum T Ca(2+)-Atpase 1, Fast Twitch Skeletal Muscle Isoform;
Ec: 3.6.3.8
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Organ: Muscle
Tissue: Fast Twitch Skeletal Muscle
symmetry Space Group: P 41 21 2
R_factor 0.249 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.514 71.514 589.355 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand NA, TG1 BindingDB enzyme Hydrolase E.C.3.6.3.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceModulatory and catalytic modes of ATP binding by the calcium pump., Jensen AM, Sorensen TL, Olesen C, Moller JV, Nissen P, EMBO J. 2006 Jun 7;25(11):2305-14. Epub 2006 May 18. PMID:16710301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (2c8l.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 2C8L
  • CSU: Contacts of Structural Units for 2C8L
  • Likely Quarternary Molecular Structure file(s) for 2C8L
  • Structure Factors (221 Kb)
  • Retrieve 2C8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C8L from S2C, [Save to disk]
  • Re-refined 2c8l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2C8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2C8L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2C8L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c8l_A] [2c8l]
  • SWISS-PROT database: [P04191]
  • Belongs to the p-type atpase (p-atpase) superfamily according to TCDB.
  • Domain organization of [AT2A1_RABIT] by SWISSPFAM
  • Domain found in 2C8L: [Cation_ATPase_N ] by SMART
    • Other resources with information on 2C8L
  • Community annotation for 2C8L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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