2CG8 Lyase Transferase date Feb 28, 2006
title The Bifunctional Dihydroneopterin Aldolase 6-Hydroxymethyl-7 Dihydropterin Synthase From Streptococcus Pneumoniae
authors A.Garcon, C.Levy, J.P.Derrick
compound source
Molecule: Dihydroneopterin Aldolase 6-Hydroxymethyl-7,8-Dih Synthase;
Chain: A, B, C, D
Synonym: Dihydroneopterin Aldolase, Dhna, 2-Amino-4-Hydroxy Hydroxymethyldihydropteridine Pyrophosphokinase, 7,8-Dihydr Hydroxymethylpterin Pyrophosphokinase, 6-Hydroxymethyl-7,8- Dihydropterin Pyrophosphokinase, Hppk, Pppk;
Ec: 4.1.2.25, 2.7.6.3
Engineered: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.215 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.440 149.440 238.740 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand
enzyme Lyase E.C.4.1.2.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of the bifunctional dihydroneopterin aldolase/6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase from Streptococcus pneumoniae., Garcon A, Levy C, Derrick JP, J Mol Biol. 2006 Jul 14;360(3):644-53. Epub 2006 May 30. PMID:16781731
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (2cg8.pdb1.gz) 306 Kb
  • CSU: Contacts of Structural Units for 2CG8
  • Likely Quarternary Molecular Structure file(s) for 2CG8
  • Retrieve 2CG8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CG8 from S2C, [Save to disk]
  • View 2CG8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2CG8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CG8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cg8_C] [2cg8_B] [2cg8_A] [2cg8_D] [2cg8]
  • SWISS-PROT database: [P59657]
  • Domain organization of [SULD_STRR6] by SWISSPFAM
  • Domain found in 2CG8: [FolB ] by SMART
  • Other resources with information on 2CG8
  • Community annotation for 2CG8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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