2CY4 Signaling Protein date Jul 04, 2005
title Crystal Structure Of Phosphotyrosine Binding (Ptb) Domain Of Epidermal Growth Factor Receptor Pathway Substrate-8 (Eps8) Related Protein 1 From Mus Musculus (Form-1 Crystal)
authors E.Mizohata, H.Hamana, S.Morita, Y.Kinoshita, K.Nagano, H.Uda, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Epidermal Growth Factor Receptor Pathway Substrate 8-Like Protein 1;
Chain: A
Fragment: Phosphotyrosine Binding (Ptb) Domain
Synonym: Eps8 Related Protein 1
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pk030114-32
Other_details: Cell Free Synthesis Using S30 Extract From E. Coli
symmetry Space Group: P 41 21 2
R_factor 0.209 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.613 72.613 75.121 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand CA, MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (2cy4.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2CY4
  • CSU: Contacts of Structural Units for 2CY4
  • Likely Quarternary Molecular Structure file(s) for 2CY4
  • Structure Factors (119 Kb)
  • Retrieve 2CY4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2CY4 from S2C, [Save to disk]
  • Re-refined 2cy4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2CY4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2CY4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2CY4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2cy4_A] [2cy4]
  • SWISS-PROT database: [Q8R5F8]
  • Domain organization of [ES8L1_MOUSE] by SWISSPFAM
  • Domain found in 2CY4: [PTB ] by SMART
    • Other resources with information on 2CY4
  • Community annotation for 2CY4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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