2D1J	Hydrolase	date	Aug 24, 2005
title	Factor Xa In Complex With The Inhibitor 2-[[4-[(5-Chloroindo Sulfonyl]Piperazin-1-Yl] Carbonyl]Thieno[3,2-B]Pyridine N-O
authors	M.Suzuki
compound		source
Molecule: Coagulation Factor X, Heavy Chain Chain: A Fragment: Residues 16-243 Synonym: Stuart Factor, Stuart-Prower Factor Ec: 3.4.21.6		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Coagulation Factor X, Light Chain Chain: B Fragment: Residues 85-138 Synonym: Stuart Factor, Stuart-Prower Factor Ec: 3.4.21.6		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Proteolytic Cleavage Product
symmetry	Space Group: P 21 21 21	R_factor 0.186 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.078 73.122 79.949 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CA, D01	enzyme	Hydrolase E.C.3.4.21.6 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Design, synthesis, and biological activity of non-basic compounds as factor Xa inhibitors: SAR study of S1 and aryl binding sites., Komoriya S, Haginoya N, Kobayashi S, Nagata T, Mochizuki A, Suzuki M, Yoshino T, Horino H, Nagahara T, Suzuki M, Isobe Y, Furugoori T, Bioorg Med Chem 2005 Jun 2;13(12):3927-54. PMID:15911309

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (2d1j.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 2D1J CSU: Contacts of Structural Units for 2D1J Likely Quarternary Molecular Structure file(s) for 2D1J Retrieve 2D1J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D1J from S2C, [Save to disk]

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2D1J

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2D1J, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d1j_B] [2d1j_A] [2d1j] SWISS-PROT database: [P00742] Domain organization of [FA10_HUMAN] by SWISSPFAM Domains found in 2D1J: [EGF] [Tryp_SPc ] by SMART

Other resources with information on 2D1J

Community annotation for 2D1J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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