2D2W Dna Binding Protein date Sep 19, 2005
title Solution Structure And Dynamics Of The Dna-Binding Domain Of Nuclear Factor
authors W.J.Chuang, C.H.Chang, W.Y.Jeng, Y.P.Chu
compound source
Molecule: Forkhead Box Protein K1
Chain: A
Fragment: Dna-Binding Domain
Synonym: Myocyte Nuclear Factor, Mnf
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Foxk1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (556 Kb) [Save to disk]
  • Biological Unit Coordinates (2d2w.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2D2W
  • Original NMR restraints for 2D2W from PDB
  • Retrieve 2D2W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D2W from S2C, [Save to disk]
    • View 2D2W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D2W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D2W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d2w_A] [2d2w]
  • SWISS-PROT database: [P42128]
  • Domain organization of [FOXK1_MOUSE] by SWISSPFAM
  • Domain found in 2D2W: [FH ] by SMART
    • Other resources with information on 2D2W
  • Community annotation for 2D2W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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