2D34 Dna date May 23, 1991
title Formaldehyde Cross-Links Daunorubicin And Dna Efficiently: Hplc And X-Ray Diffraction Studies
authors A.H.J.Wang, Y.G.Gao, Y.C.Liaw, Y.K.Li
compound source
Molecule: 5'-D(Cpgptp(A35)Pcpg)-3'
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 41 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.021 28.021 52.471 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand A40, DM1, MG enzyme
Primary referenceFormaldehyde cross-links daunorubicin and DNA efficiently: HPLC and X-ray diffraction studies., Wang AH, Gao YG, Liaw YC, Li YK, Biochemistry 1991 Apr 23;30(16):3812-5. PMID:2018756
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (2d34.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 2D34
  • CSU: Contacts of Structural Units for 2D34
  • Likely Quarternary Molecular Structure file(s) for 2D34
  • Retrieve 2D34 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2D34 from S2C, [Save to disk]
    • View 2D34 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2D34
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2D34, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2d34] [2d34_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2D34
  • Community annotation for 2D34 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science