2D3U	Transferase	date	Oct 02, 2005
title	X-Ray Crystal Structure Of Hepatitis C Virus Rna Dependent R Polymerase In Complex With Non-Nucleoside Analogue Inhibito
authors	B.K.Biswal, M.Wang, M.M.Cherney, L.Chan, C.G.Yannopoulos, D.Bilim J.Bedard, M.N.G.James
compound		source
Molecule: Polyprotein Chain: A, B Fragment: Rna-Dependent Rna Polymerase(Residues 2420-2989) Synonym: Ns5b Ec: 2.7.7.48 Engineered: Yes		Organism_scientific: Hepatitis C Virus Organism_taxid: 11103 Gene: Type 1b Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21
symmetry	Space Group: P 21 21 21	R_factor 0.208 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.925 104.314 127.013 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	CCT	enzyme	Transferase E.C.2.7.7.48 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Non-nucleoside Inhibitors Binding to Hepatitis C Virus NS5B Polymerase Reveal a Novel Mechanism of Inhibition., Biswal BK, Wang M, Cherney MM, Chan L, Yannopoulos CG, Bilimoria D, Bedard J, James MN, J Mol Biol. 2006 Aug 4;361(1):33-45. Epub 2006 Jun 16. PMID:16828488

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk] Biological Unit Coordinates (2d3u.pdb1.gz) 97 Kb Biological Unit Coordinates (2d3u.pdb2.gz) 98 Kb LPC: Ligand-Protein Contacts for 2D3U CSU: Contacts of Structural Units for 2D3U Likely Quarternary Molecular Structure file(s) for 2D3U Structure Factors (644 Kb) Retrieve 2D3U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2D3U from S2C, [Save to disk] Re-refined 2d3u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2D3U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2D3U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2D3U, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2d3u_B] [2d3u] [2d3u_A] SWISS-PROT database: [Q99AU2] Domain organization of [Q99AU2_9HEPC] by SWISSPFAM

Other resources with information on 2D3U

Community annotation for 2D3U at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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