2DCV Antimicrobial Protein date Jan 16, 2006
title The Solution Structure Of Horseshoe Crab Antimicrobial Pepti Tachystatin B With The Inhibitory Cystine-Knot Motif
authors N.Fujitani, T.Kohno
compound source
Molecule: Tachystatin-B1
Chain: A
 Organism_scientific: Tachypleus Tridentatus
Organism_taxid: 6853
Cell: Hemocyte
methodSolution NMR
note 2DCV is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of horseshoe crab antimicrobial peptide tachystatin B with an inhibitory cystine-knot motif., Fujitani N, Kouno T, Nakahara T, Takaya K, Osaki T, Kawabata S, Mizuguchi M, Aizawa T, Demura M, Nishimura S, Kawano K, J Pept Sci. 2007 Apr;13(4):269-79. PMID:17394123
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk]
  • Biological Unit Coordinates (2dcv.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 2DCV
  • Original NMR restraints for 2DCV from PDB
  • Retrieve 2DCV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DCV from S2C, [Save to disk]
    • View 2DCV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DCV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DCV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dcv] [2dcv_A]
  • SWISS-PROT database: [P0C1Z8]
  • Belongs to the ca(2+) channel-targeting spider toxin (cst) family according to TCDB.
  • Domain organization of [TACB1_TACTR] by SWISSPFAM
    • Other resources with information on 2DCV
  • Community annotation for 2DCV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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