2DES Dna date Mar 16, 1993
title Interactions Between Morpholinyl Anthracyclines And Dna: The Structure Of A Morpholino Doxorubicin Bound To D(Cgtacg)
authors M.Cirilli, F.Bachechi, G.Ughetto, F.P.Colonna, M.L.Capobianco
compound source
Molecule: Dna (5'-D(Cpgptpapcpg)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
18.010 18.830 26.750 92.60 100.50 94.90
method X-Ray Diffractionresolution 1.50 Å
ligand DMM, MG, NA enzyme
Primary referenceInteractions between morpholinyl anthracyclines and DNA. The crystal structure of a morpholino doxorubicin bound to d(CGTACG)., Cirilli M, Bachechi F, Ughetto G, Colonna FP, Capobianco ML, J Mol Biol 1993 Apr 5;230(3):878-89. PMID:8478940
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (2des.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 2DES
  • CSU: Contacts of Structural Units for 2DES
  • Likely Quarternary Molecular Structure file(s) for 2DES
  • Structure Factors (28 Kb)
  • Retrieve 2DES in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DES from S2C, [Save to disk]
  • Re-refined 2des structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2DES in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DES
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DES, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2des_A] [2des_B] [2des]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2DES
  • Community annotation for 2DES at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science