2DLO Cell Adhesion date Apr 20, 2006
title Solution Structure Of The Second Lim Domain Of Human Thyroid Interacting Protein 6
authors X.R.Qin, F.Hayashi, S.Yokoyama, Riken Structural Genomicsprote Initiative (Rsgi)
compound source
Molecule: Thyroid Receptor-Interacting Protein 6
Chain: A
Fragment: Lim Domain, Lim Zinc-Binding 2
Synonym: Trip6, Opa-Interacting Protein 1, Zyxin-Related Pr Zrp-1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trip6, Oip1
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P041101-03
Other_details: Cell Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (391 Kb) [Save to disk]
  • Biological Unit Coordinates (2dlo.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 2DLO
  • CSU: Contacts of Structural Units for 2DLO
  • Original NMR restraints for 2DLO from PDB
  • Retrieve 2DLO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DLO from S2C, [Save to disk]
    • View 2DLO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DLO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DLO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dlo] [2dlo_A]
  • SWISS-PROT database: [Q15654]
  • Domain organization of [TRIP6_HUMAN] by SWISSPFAM
  • Domain found in 2DLO: [LIM ] by SMART
    • Other resources with information on 2DLO
  • Community annotation for 2DLO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science