2DMG Lipid Binding Protein date Apr 21, 2006
title Solution Structure Of The Third C2 Domain Of Kiaa1228 Protei
authors T.Nagashima, F.Hayashi, S.Yokoyama, Riken Structural Genomicsp Initiative (Rsgi)
compound source
Molecule: Kiaa1228 Protein
Chain: A
Fragment: C2 Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa1228
Expression_system: Cell Free Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050627-28
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (740 Kb) [Save to disk]
  • Biological Unit Coordinates (2dmg.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 2DMG
  • Original NMR restraints for 2DMG from PDB
  • Retrieve 2DMG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DMG from S2C, [Save to disk]
    • View 2DMG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DMG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DMG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dmg] [2dmg_A]
  • SWISS-PROT database: [A0FGR8]
  • Belongs to the extended-synaptotagmin (e-syt) family according to TCDB.
  • Domain organization of [ESYT2_HUMAN] by SWISSPFAM
  • Domain found in 2DMG: [C2 ] by SMART
    • Other resources with information on 2DMG
  • Community annotation for 2DMG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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