2DP9 Structural Genomics, Unknown Function date May 08, 2006
title Crystal Structure Of Conserved Hypothetical Protein Ttha0113 Thermus Thermophilus Hb8
authors Y.Agari, S.Kuramitsu, Riken Structural Genomicsproteomics Ini (Rsgi)
compound source
Molecule: Hypothetical Protein Ttha0113
Chain: A
Fragment: Residues 1-121
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: C 1 2 1
R_factor 0.215 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.369 54.468 42.980 90.00 97.22 90.00
method X-Ray Diffractionresolution 1.90 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2dp9.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 2DP9
  • Likely Quarternary Molecular Structure file(s) for 2DP9
  • Structure Factors (130 Kb)
  • Retrieve 2DP9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2DP9 from S2C, [Save to disk]
  • Re-refined 2dp9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2DP9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2DP9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2DP9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2dp9_A] [2dp9]
  • SWISS-PROT database: [Q5SM30]
  • Domain organization of [Q5SM30_THET8] by SWISSPFAM
  • Domain found in 2DP9: [ASCH ] by SMART
    • Other resources with information on 2DP9
  • Community annotation for 2DP9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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