2DSN	Hydrolase	date	Jul 03, 2006
title	Crystal Structure Of T1 Lipase
authors	H.Matsumura, Y.Kai
compound		source
Molecule: Thermostable Lipase Chain: A, B Fragment: Unp Residues 30-416 Ec: 3.1.1.3 Engineered: Yes		Organism_scientific: Geobacillus Zalihae Organism_taxid: 213419 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Origami B Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgext1s
symmetry	Space Group: C 1 2 1	R_factor 0.174 R_Free 0.188
crystal cell	length a length b length c angle alpha angle beta angle gamma 117.731 81.270 99.912 90.00 97.09 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	CA, CL, NA, ZN	enzyme	Hydrolase E.C.3.1.1.3 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Novel cation-pi interaction revealed by crystal structure of thermoalkalophilic lipase., Matsumura H, Yamamoto T, Leow TC, Mori T, Salleh AB, Basri M, Inoue T, Kai Y, Rahman RN, Proteins. 2007 Oct 11;70(2):592-598. PMID:17932933

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk] Biological Unit Coordinates (2dsn.pdb1.gz) 73 Kb Biological Unit Coordinates (2dsn.pdb2.gz) 73 Kb LPC: Ligand-Protein Contacts for 2DSN CSU: Contacts of Structural Units for 2DSN Likely Quarternary Molecular Structure file(s) for 2DSN Structure Factors (1174 Kb) Retrieve 2DSN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DSN from S2C, [Save to disk] Re-refined 2dsn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DSN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DSN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DSN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dsn] [2dsn_A] [2dsn_B] SWISS-PROT database: [Q842J9] Domain organization of [Q842J9_9BACI] by SWISSPFAM

Other resources with information on 2DSN

Community annotation for 2DSN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---