2DW5	Hydrolase	date	Aug 04, 2006
title	Crystal Structure Of Human Peptidylarginine Deiminase 4 In C With N-Alpha-Benzoyl-N5-(2-Fluoro-1-Iminoethyl)-L-Ornithine
authors	Y.Luo, K.Arita, M.Sato, P.R.Thompson
compound		source
Molecule: Protein-Arginine Deiminase Type-4 Chain: A Synonym: Protein-Arginine Deiminase Type Iv, Peptidylargini Deiminase Iv, Hl-60 Pad; Ec: 3.5.3.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Padi4, Padi5, Pdi5 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p-1
symmetry	Space Group: C 1 2 1	R_factor 0.198 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 146.259 60.516 114.911 90.00 124.19 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	BFB, CA, SO4	enzyme	Hydrolase E.C.3.5.3.15 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Inhibitors and Inactivators of Protein Arginine Deiminase 4: Functional and Structural Characterization(,)., Luo Y, Arita K, Bhatia M, Knuckley B, Lee YH, Stallcup MR, Sato M, Thompson PR, Biochemistry. 2006 Oct 3;45(39):11727-11736. PMID:17002273

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (2dw5.pdb1.gz) 201 Kb LPC: Ligand-Protein Contacts for 2DW5 CSU: Contacts of Structural Units for 2DW5 Likely Quarternary Molecular Structure file(s) for 2DW5 Structure Factors (300 Kb) Retrieve 2DW5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2DW5 from S2C, [Save to disk] Re-refined 2dw5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2DW5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2DW5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2DW5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2dw5_A] [2dw5] SWISS-PROT database: [Q9UM07] Domain organization of [PADI4_HUMAN] by SWISSPFAM

Other resources with information on 2DW5

Community annotation for 2DW5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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