2EA4 Hydrolase date Jan 30, 2007
title H-Metap2 Complexed With A797859
authors C.H.Park
compound source
Molecule: Methionine Aminopeptidase 2
Chain: A
Fragment: Residues 110-478
Synonym: Metap 2, Peptidase M 2, Initiation Factor 2-Associ Kda Glycoprotein, P67, P67eif2;
Ec: 3.4.11.18
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: C 2 2 21
R_factor 0.211 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.091 100.280 100.722 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand F79, MN BindingDB enzyme Hydrolase E.C.3.4.11.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLead optimization of methionine aminopeptidase-2 (MetAP2) inhibitors containing sulfonamides of 5,6-disubstituted anthranilic acids., Wang GT, Mantei RA, Kawai M, Tedrow JS, Barnes DM, Wang J, Zhang Q, Lou P, Garcia LA, Bouska J, Yates M, Park C, Judge RA, Lesniewski R, Sheppard GS, Bell RL, Bioorg Med Chem Lett. 2007 May 15;17(10):2817-22. Epub 2007 Feb 25. PMID:17350258
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (2ea4.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 2EA4
  • CSU: Contacts of Structural Units for 2EA4
  • Likely Quarternary Molecular Structure file(s) for 2EA4
  • Retrieve 2EA4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EA4 from S2C, [Save to disk]
  • View 2EA4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2EA4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EA4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ea4_A] [2ea4]
  • SWISS-PROT database: [P50579]
  • Domain organization of [AMPM2_HUMAN] by SWISSPFAM
  • Other resources with information on 2EA4
  • Community annotation for 2EA4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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