2ED7 Apoptosis date Feb 14, 2007
title Solution Structure Of The First Fibronectin Type III Domain Netrin Receptor Dcc
authors N.Tochio, S.Koshiba, T.Tomizawa, T.Kigawa, S.Yokoyama, Riken Stru Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Netrin Receptor Dcc
Chain: A
Fragment: First Fn3 Domain, Fibronectin Type-III 1
Synonym: Tumor Suppressor Protein Dcc, Colorectal Cancer Su
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dcc
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050905-20
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (595 Kb) [Save to disk]
  • Biological Unit Coordinates (2ed7.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2ED7
  • Original NMR restraints for 2ED7 from PDB
  • Retrieve 2ED7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ED7 from S2C, [Save to disk]
    • View 2ED7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ED7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ED7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ed7_A] [2ed7]
  • SWISS-PROT database: [P43146]
  • Domain organization of [DCC_HUMAN] by SWISSPFAM
  • Domain found in 2ED7: [FN3 ] by SMART
    • Other resources with information on 2ED7
  • Community annotation for 2ED7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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