2EMT	Cell Adhesion	date	Mar 28, 2007
title	Crystal Structure Analysis Of The Radixin Ferm Domain Comple Adhesion Molecule Psgl-1
authors	Y.Takai, K.Kitano, S.Terawaki, R.Maesaki, T.Hakoshima
compound		source
Molecule: Radixin Chain: A, B Fragment: N-Terminal Ferm Domain (Residues 1-310) Synonym: Esp10 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex4t-3
Molecule: P-Selectin Glycoprotein Ligand 1 Chain: C, D, E Fragment: Psgl-1 Cytoplasmic Peptide, 18 N-Terminal Residue Cytoplasmic Tail; Synonym: Psgl-1, Selectin P Ligand Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Mouse.
symmetry	Space Group: P 21 21 21	R_factor 0.235 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.740 85.730 117.751 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis of PSGL-1 binding to ERM proteins., Takai Y, Kitano K, Terawaki S, Maesaki R, Hakoshima T, Genes Cells. 2007 Dec;12(12):1329-38. PMID:18076570

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk] Biological Unit Coordinates (2emt.pdb1.gz) 57 Kb Biological Unit Coordinates (2emt.pdb2.gz) 56 Kb CSU: Contacts of Structural Units for 2EMT Likely Quarternary Molecular Structure file(s) for 2EMT Structure Factors (156 Kb) Retrieve 2EMT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2EMT from S2C, [Save to disk] Re-refined 2emt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2EMT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2EMT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2EMT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2emt_D] [2emt_A] [2emt_B] [2emt_E] [2emt] [2emt_C] SWISS-PROT database: [P26043] [Q62170] Domain organization of [RADI_MOUSE] [SELPL_MOUSE] by SWISSPFAM Domains found in 2EMT: [B41] [FERM_C ] by SMART

Other resources with information on 2EMT

Community annotation for 2EMT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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