2F4O	Hydrolase Hydrolase Inhibitor	date	Nov 23, 2005
title	The Mouse Pngase-Hr23 Complex Reveals A Complete Remodulatio Protein-Protein Interface Compared To Its Yeast Orthologs
authors	G.Zhao, X.Zhou, L.Wang, C.Kisker, W.J.Lennarz, H.Schindelin
compound		source
Molecule: Peptide N-Glycanase Chain: A Fragment: Catalytic Domain, Residues 164-450 Ec: 3.5.1.52 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21b
Molecule: Xp-C Repair Complementing Complex 58 Kda Protein Chain: B Fragment: Xpcb Domain, Residues 273-332 Synonym: Mhr23b, Uv Excision Repair Protein Rad23 Homolog B Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Rad23b, Mhr23b Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptyb1
Molecule: Phq-Val-Ala-Asp-Cf0 Chain: I Engineered: Yes		Synthetic: Yes
symmetry	Space Group: C 1 2 1	R_factor 0.220 R_Free 0.293
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.958 52.097 80.848 90.00 113.50 90.00
method	X-Ray Diffraction	resolution	2.26 Å
ligand	CF0, CL, PHQ, ZN	enzyme	Hydrolase E.C.3.5.1.52 BRENDA
Gene Ontology	Chain Function Process Component B
Primary reference	Structure of the mouse peptide N-glycanase-HR23 complex suggests co-evolution of the endoplasmic reticulum-associated degradation and DNA repair pathways., Zhao G, Zhou X, Wang L, Li G, Kisker C, Lennarz WJ, Schindelin H, J Biol Chem. 2006 May 12;281(19):13751-61. Epub 2006 Feb 24. PMID:16500903

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (2f4o.pdb1.gz) 59 Kb Biological Unit Coordinates (2f4o.pdb2.gz) 116 Kb LPC: Ligand-Protein Contacts for 2F4O CSU: Contacts of Structural Units for 2F4O Likely Quarternary Molecular Structure file(s) for 2F4O Structure Factors (258 Kb) Retrieve 2F4O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F4O from S2C, [Save to disk] Re-refined 2f4o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F4O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F4O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F4O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f4o_I] [2f4o_A] [2f4o_B] [2f4o] SWISS-PROT database: [Q9JI78] [P54728] Domain organization of [NGLY1_MOUSE] [RD23B_MOUSE] by SWISSPFAM Domains found in 2F4O: [STI1] [TGc ] by SMART

Other resources with information on 2F4O

Community annotation for 2F4O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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