2F5M	Hydrolase	date	Nov 26, 2005
title	Cross-Linked Barnase Soaked In Bromo-Ethanol
authors	T.Prange, M.Salem
compound		source
Molecule: Ribonuclease Chain: A, B, C Synonym: Barnase, Rnase Ba Ec: 3.1.27.- Engineered: Yes		Organism_scientific: Bacillus Amyloliquefaciens Organism_taxid: 1390 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmj1002
symmetry	Space Group: P 32	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.280 59.280 81.550 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	BRJ	enzyme	Hydrolase E.C.3.1.27 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	On the edge of the denaturation process: Application of X-ray diffraction to barnase and lysozyme cross-linked crystals with denaturants in molar concentrations., Salem M, Mauguen Y, Prange T, Biochim Biophys Acta. 2006 Mar 20;. PMID:16600702

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk] Biological Unit Coordinates (2f5m.pdb1.gz) 19 Kb Biological Unit Coordinates (2f5m.pdb2.gz) 20 Kb Biological Unit Coordinates (2f5m.pdb3.gz) 20 Kb LPC: Ligand-Protein Contacts for 2F5M CSU: Contacts of Structural Units for 2F5M Likely Quarternary Molecular Structure file(s) for 2F5M Structure Factors (200 Kb) Retrieve 2F5M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F5M from S2C, [Save to disk] Re-refined 2f5m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F5M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F5M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F5M, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f5m_C] [2f5m_A] [2f5m] [2f5m_B] SWISS-PROT database: [P00648] Domain organization of [RNBR_BACAM] by SWISSPFAM

Other resources with information on 2F5M

Community annotation for 2F5M at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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