2F7P	Hydrolase	date	Dec 01, 2005
title	Golgi Alpha-Mannosidase II Complex With Benzyl-Mannostatin A
authors	D.A.Kuntz, D.R.Rose
compound		source
Molecule: Alpha-Mannosidase II Chain: A Fragment: Catalytic Domain Synonym: Mannosyl-Oligosaccharide 1,3-1,6- Alpha-Mannosidas Golgi Alpha-Mannosidase II; Aman II; Ec: 3.2.1.114 Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Alpha-Man-II, Gmii Expression_system: Drosophila Melanogaster Expression_system_common: Fruit Fly Expression_system_taxid: 7227 Expression_system_strain: S2 Cells Expression_system_vector_type: Stable Transfection Plasmid Expression_system_plasmid: Pmtbip_nhis
symmetry	Space Group: P 21 21 21	R_factor 0.166 R_Free 0.180
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.954 109.874 139.035 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.28 Å
ligand	2SK, MPD, NAG, ZN	enzyme	Hydrolase E.C.3.2.1.114 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Basis of the Inhibition of Golgi alpha-Mannosidase II by Mannostatin A and the Role of the Thiomethyl Moiety in Ligand-Protein Interactions., Kawatkar SP, Kuntz DA, Woods RJ, Rose DR, Boons GJ, J Am Chem Soc. 2006 Jun 28;128(25):8310-8319. PMID:16787095

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk] Biological Unit Coordinates (2f7p.pdb1.gz) 191 Kb LPC: Ligand-Protein Contacts for 2F7P CSU: Contacts of Structural Units for 2F7P Likely Quarternary Molecular Structure file(s) for 2F7P Structure Factors (3621 Kb) Retrieve 2F7P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2F7P from S2C, [Save to disk] Re-refined 2f7p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2F7P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2F7P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2F7P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2f7p] [2f7p_A] SWISS-PROT database: [Q24451] Domain organization of [MAN2_DROME] by SWISSPFAM Domain found in 2F7P: [Alpha-mann_mid ] by SMART

Other resources with information on 2F7P

Community annotation for 2F7P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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