2FBM Structural Genomics, Unknown Function date Dec 09, 2005
title Acetyltransferase Domain Of Cdy1
authors J.R.Min, T.Antoshenko, W.Hong, P.Loppnau, J.Weigelt, M.Sundstrom, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, A.N.Plotnikov, Struct Genomics Consortium (Sgc)
compound source
Molecule: Y Chromosome Chromodomain Protein 1, Telomeric Is
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdy1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.187 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.925 133.767 122.629 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (2fbm.pdb1.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 2FBM
  • CSU: Contacts of Structural Units for 2FBM
  • Likely Quarternary Molecular Structure file(s) for 2FBM
  • Structure Factors (355 Kb)
  • Retrieve 2FBM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FBM from S2C, [Save to disk]
  • Re-refined 2fbm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FBM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FBM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FBM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fbm_A] [2fbm] [2fbm_B] [2fbm_C]
  • SWISS-PROT database: [Q9Y6F8]
  • Domain organization of [CDY1_HUMAN] by SWISSPFAM
    • Other resources with information on 2FBM
  • Community annotation for 2FBM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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