2FFR	Transferase	date	Dec 20, 2005
title	Crystallographic Studies On N-Azido-Beta-D-Glucopyranosylami Inhibitor Of Glycogen Phosphorylase: Comparison With N-Acet Glucopyranosylamine
authors	E.I.Petsalakis, E.D.Chrysina, C.Tiraidis, T.Hadjiloi, D.D.Leonid N.G.Oikonomakos, U.Aich, B.Varghese, D.Loganathan
compound		source
Molecule: Glycogen Phosphorylase, Muscle Form Chain: A Synonym: Myophosphorylase Ec: 2.4.1.1		Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 Tissue: Muscle
symmetry	Space Group: P 43 21 2	R_factor 0.184 R_Free 0.199
crystal cell	length a length b length c angle alpha angle beta angle gamma 128.626 128.626 116.163 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.03 Å
ligand	DL6, PLP BindingDB	enzyme	Transferase E.C.2.4.1.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystallographic studies on N-azidoacetyl-beta-d-glucopyranosylamine, an inhibitor of glycogen phosphorylase: Comparison with N-acetyl-beta-d-glucopyranosylamine., Petsalakis EI, Chrysina ED, Tiraidis C, Hadjiloi T, Leonidas DD, Oikonomakos NG, Aich U, Varghese B, Loganathan D, Bioorg Med Chem. 2006 Aug 1;14(15):5316-24. Epub 2006 Apr 17. PMID:16616506

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk] Biological Unit Coordinates (2ffr.pdb1.gz) 273 Kb LPC: Ligand-Protein Contacts for 2FFR CSU: Contacts of Structural Units for 2FFR Likely Quarternary Molecular Structure file(s) for 2FFR Retrieve 2FFR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FFR from S2C, [Save to disk]

View 2FFR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FFR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FFR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ffr] [2ffr_A] SWISS-PROT database: [P00489] Domain organization of [PYGM_RABIT] by SWISSPFAM

Other resources with information on 2FFR

Community annotation for 2FFR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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